Infection Control & Hospital Epidemiology
4. Longtin Y, Schneider A, Tschopp C, et al. Contamination of stethoscopes and physicians’ hands after a physical examination. Mayo Clin Proc 2014;89:291–299.
5. Tschopp C, Schneider A, Longtin Y, Renzi G, Schrenzel J, Pittet D. Predictors of heavy stethoscope contamination following a physical examination. Infect Control Hosp Epidemiol 2016;37:673–679.
6. Messina G, Ceriale E, Lenzi D, Burgassi S, Azzolini E, Manzi P. Environmental contaminants in hospital settings and progress in disinfecting techniques. BioMed Res Int 2013;2013:429780.
7. Raghubanshi BR, Sapkota S, Adhikari A, Dutta A, Bhattarai U, Bhandari R. Use of 90% ethanol to decontaminate stethoscopes in resource limited settings. Antimicrob Resist Infect Control 2017;6:68.
8. Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G. High-throughput sequencing methods and analysis for microbiome research. J Microbiol Method 2013;95:401–414.
9. Hugerth LW, Andersson AF. Analysing microbial community composi- tion through amplicon sequencing: from sampling to hypothesis testing. Frontier Microbiol 2017;8:1561.
10. Salter SJ, Cox MJ, Turek EM, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol 2014;12:87.
11. Kim D, Hofstaedter CE, Zhao C, et al. Optimizing methods and dodging pitfalls in microbiome research. Microbiome 2017;5:52.
12. Charlson ES, Diamond JM, Bittinger K, et al. Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. Am J Respir Crit Care Med 2012;186:536–545.
13. Lauder AP, Roche AM, Sherrill-Mix S, et al. Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota. Microbiome 2016;4:29.
14. Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high- throughput community sequencing data. Nat Methods 2010;7:335–336.
177
15. Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 2013;79:5112–5120.
16. Ubeda C, Taur Y, Jenq RR, et
al.Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans. JClin Invest 2010;120:4332–4341.
17. Bittinger K, Charlson ES, Loy E, et al. Improved characterization of medically relevant fungi in the human respiratory tract using next- generation sequencing. Genome Biol 2014;15:487.
18. Sherrill-Mix S, McCormick K, Lauder A, et al. Allometry and ecology of the bilaterian gut microbiome. MBio 2018;9(2):e00319–18. doi: 10.1128/ mBio.00319-18.
19. Tremblay J, Singh K, Fern A, et al. Primer and platform effects on 16S rRNA tag sequencing. Frontier Microbiol 2015;6:771.
20. Fouhy F, Clooney AG, Stanton C, Claesson MJ, Cotter PD. 16S rRNA gene sequencing of mock microbial populations—impact of DNA extraction method, primer choice and sequencing platform. BMC Microbiol 2016;16:123.
21. Lozupone CA, Knight R. Species divergence and the measurement of microbial diversity. FEMS Microbiol Revs 2008;32:557–578.
22. Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005;71:8228–8235.
23. Rutala WA, Weber DJ, and the Healthcare Infection Control Practices Advisory Committee (HICPAC). Guideline for Disinfection and Steriliza- tion in Healthcare Facilities, 2008. Center for Disease Control website.
https://www.cdc.gov/infectioncontrol/pdf/guidelines/disinfection-guidelines. pdf. Published 2017. Accessed November 21, 2018.
24. Emerson JB, Adams RI, Roman CMB, et al. Schrodinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems. Microbiome 2017;5:86.
Page 1 |
Page 2 |
Page 3 |
Page 4 |
Page 5 |
Page 6 |
Page 7 |
Page 8 |
Page 9 |
Page 10 |
Page 11 |
Page 12 |
Page 13 |
Page 14 |
Page 15 |
Page 16 |
Page 17 |
Page 18 |
Page 19 |
Page 20 |
Page 21 |
Page 22 |
Page 23 |
Page 24 |
Page 25 |
Page 26 |
Page 27 |
Page 28 |
Page 29 |
Page 30 |
Page 31 |
Page 32 |
Page 33 |
Page 34 |
Page 35 |
Page 36 |
Page 37 |
Page 38 |
Page 39 |
Page 40 |
Page 41 |
Page 42 |
Page 43 |
Page 44 |
Page 45 |
Page 46 |
Page 47 |
Page 48 |
Page 49 |
Page 50 |
Page 51 |
Page 52 |
Page 53 |
Page 54 |
Page 55 |
Page 56 |
Page 57 |
Page 58 |
Page 59 |
Page 60 |
Page 61 |
Page 62 |
Page 63 |
Page 64 |
Page 65 |
Page 66 |
Page 67 |
Page 68 |
Page 69 |
Page 70 |
Page 71 |
Page 72 |
Page 73 |
Page 74 |
Page 75 |
Page 76 |
Page 77 |
Page 78 |
Page 79 |
Page 80 |
Page 81 |
Page 82 |
Page 83 |
Page 84 |
Page 85 |
Page 86 |
Page 87 |
Page 88 |
Page 89 |
Page 90 |
Page 91 |
Page 92 |
Page 93 |
Page 94 |
Page 95 |
Page 96 |
Page 97 |
Page 98 |
Page 99 |
Page 100 |
Page 101 |
Page 102 |
Page 103 |
Page 104 |
Page 105 |
Page 106 |
Page 107 |
Page 108 |
Page 109 |
Page 110 |
Page 111 |
Page 112 |
Page 113 |
Page 114 |
Page 115 |
Page 116 |
Page 117 |
Page 118 |
Page 119 |
Page 120 |
Page 121 |
Page 122 |
Page 123 |
Page 124 |
Page 125 |
Page 126 |
Page 127 |
Page 128 |
Page 129 |
Page 130 |
Page 131 |
Page 132 |
Page 133 |
Page 134 |
Page 135 |
Page 136 |
Page 137 |
Page 138 |
Page 139 |
Page 140 |
Page 141 |
Page 142 |
Page 143 |
Page 144 |
Page 145 |
Page 146 |
Page 147 |
Page 148 |
Page 149 |
Page 150 |
Page 151 |
Page 152 |
Page 153 |
Page 154 |
Page 155 |
Page 156
