26 February / March 2019
Figure 4: Blending organic solvents to achieve a gradient separation of seven basic analytes. 20 mM KH2
PO4 pH 2.7
(aq) was used as the aqueous mobile phase component (line A) and various aqueous/organic mixes were used on line B (see fi gure captions). Column: ACE 3 C18, 150 x 4.6 mm, fl ow rate: 1.0 mL/min, temperature: 35°C, gradient: 5-70% B in 11 mins, detection: 205 nm. Sample: 1. Benzylamine, 2. Procainamide, 3. Terbutaline, 4. Salbutamol, 5. Amiloride, 6. Trimethylbenzylamine, 7. Pindolol.
Conclusions
Acetonitrile and methanol both offer advantages and disadvantages for use as the organic modifi er in reversed-phase liquid chromatography, with the optimum choice being application driven. Perhaps the most important aspect of these two solvents is that they offer substantially different selectivity to one another. Investigating both methanol and acetonitrile is therefore highly recommended as a valuable approach when developing a new reversed-phase method.
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Therapeutic oligos represent an important area of research in the pharmaceutical industry today. These drug candidates are typically 8-50 nucleotides long and contain single-stranded DNA or RNA. Oligonucleotides are typically analysed using ion-pairing chromatography. Oligonucleotides are easily degraded via phosphodiester-cleaving enzymes. However, with a thiophosphate modified phosphate group, the stability significantly increases. Phosphorothioate modified oligos will have a stereocenter at each modified phosphate group, leading to 2n-1 diastereomers, all with an individual retention time in the chromatography. For a 20-nucleotide long oligo, that’s 524 288 species present. The partial resolution of these species results in peak broadening, further complicating chromatographic separation. To resolve the problem, ion-pairing agents with longer alkyl chains can be used.
In a study of the influence of stationary phase and ion-pairing agent on the separation of oligos, Kromasil Phenyl showed to be a very good choice when separating oligonucleotides in general, exhibiting very sharp peaks, and good selectivity.
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