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Informatics


Table 1 TOOL AWS AWS Batch AWS Lambda DESCRIPTION A leading provider of cloud-based Infrastructure-as-a-Service


AWS Batch enables developers, scientists, and engineers to easily and efficiently run hundreds of thousands of batch computing jobs on AWS


AWS Lambda lets you run code without provisioning or managing servers. You pay only for the compute time you consume – there is no charge when your code is not running


BaseSpace Sequence Hub


Biomarker


Data management and analysis that is simple enough for labs getting started, or powerful enough for rapidly scaling up next-generation sequencing (NGS) operations


A biomarker is a characteristic that is objectively measured and evaluated as an indicator of normal biologic processes, pathogenic processes, or pharmacologic responses to a therapeutic intervention


CloudKnot DNAnexus Dragen A Python Library to Run your Existing Code on AWS Batch


A secure, trusted cloud platform and global network for scientific collaboration and accelerated discovery


Dynamic Read Analysis for GENomics.A Bio-IT Platform providing accurate, ultra-rapid secondary analysis of sequencing data


Galaxy GATK Google Cloud Lifebit Microsoft Azure Nextflow pywren SevenBridges CE Marking Genome


An open source,web-based platform for data intensive biomedical research


A genomic analysis toolkit focused on variant discovery A leading provider of cloud-based Infrastructure-as-a-Service


Automates multi-omics & big data HPC/Cloud deployment. Leverages AI for breakthrough insights generation


A leading provider of cloud-based Infrastructure-as-a-Service


Nextflow enables scalable and reproducible scientific workflows using software containers


Pywren runs existing python code at massive scale via AWS Lambda


A biomedical data company, specialising in software and data analytics to drive public and private healthcare research.


CE marking proves that your product has been assessed and meets EU safety, health and environmental protection requirements


A genome is an organism’s complete set of DNA, including all of its genes URL https://aws.amazon.com/ https://aws.amazon.com/batch/ https://aws.amazon.com/lambda/


https://www.illumina.com/content/dam/illumina- marketing/documents/products/datasheets/datas heet_basespace.pdf


https://link.springer.com/referenceworkentry/10. 1007%2F978-1-4419-9863-7_211


http://conference.scipy.org/proceedings/scipy201 8/pdfs/adam_richie-halford.pdf


https://www.dnanexus.com/


https://emea.illumina.com/products/by- type/informatics-products/dragen-bio-it- platform.html


https://usegalaxy.org/ https://software.broadinstitute.org/gatk/ https://cloud.google.com/ https://lifebit.ai/ https://azure.microsoft.com/en-gb/ https://www.nextflow.io/ http://pywren.io/ https://www.sevenbridges.com/


https://europa.eu/youreurope/business/product/ ce-mark/index_en.htm


https://ghr.nlm.nih.gov/primer/hgp/genome


Drug DiscoveryWorld Summer 2019


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