Issue 149 August/September 2016 CONTENTS
High-performance computing Memories of the future
Robert Roe investigates developments in memory technology aimed at the next generation of HPC applications
Exploring energy efficiency
Mirren White takes a look at a European project to understand and improve energy efficiency in HPC and embedded computing
Improving diversity at EuroMPI
Toni Collins explains the initial steps undertaken to examine the role that gender plays within the HPC community
Providing an HPC blueprint
Robert Roe discovers how the the High Performance Centre Stuttgart is laying the foundation for application-driven HPC
Laboratory informatics Data dissection
Sophia Ktori looks at the developments in bioinfomatics that are putting pressure on data analysis and interpretation
Accelerating life science research
Robert Roe investigates the far-reaching implications of implementing high-performance computing for life science researchers
Applications 3D printing gets airborne
Gemma Church looks at the issues of moving additive manufacturing into the mainstream
Applications go faster, higher, stronger
Andrew Jones investigates the barriers and solutions to accelerating application performance
Resources Suppliers' directory
EDITORIAL AND ADMINISTRATIVE TEAM Managing editor Tim Gillett
editor.scw@
europascience.com Deputy editor Robert Roe
robert.roe@
europascience.com
Specialist reporters Sophia Ktori, Gloria Metrick, Gemma Church
Subscriptions marketing manager Sarah Sharpe
subs.electro@europascience.com
ADVERTISING TEAM Advertising sales Warren Clark Tel: +44 (0)1223 221 039 Fax: +44 (0)1223 213 385
warren.clark@
europascience.com
www.scientific-computing.com l @scwmagazine 28 24 22 14 12 8 4
ADDITIVE VALUE ON THE RISE
Te progress made in 3D printing – properly known as additive manufacturing – has been nothing short of stupendous in recent years. Tough early equipment
and materials were developed in the 1980s, the process really began to gain wider currency since 2000 and has since moved further towards the mainstream – even if some of the processes involved are still in their infancy. On page 24, Gemma Church looks at the
applications and issues involved in the additive manufacturing process, along with some of the most recent achievements including the development of bicycle frames tailored to customers' individual measurements or specifications. Elsewhere in this issue of Scientific
16
Computing World, on page 4 Robert Roe investigates how the rise of data-centric computing, and the convergence of traditional high-performance computing with big data and real-time data analytics, is driving significant development in memory technology and several changes to the long-established architectures of HPC. Developments in bioinformatics are also
putting pressure on those tasked with data analysis and interpretation, and on page 16 Sophia Ktori looks at the demands driven by next-generation sequencing, high content screening, metabolomics and other emerging biological disciplines. We also look at initiatives to improve energy
efficiency in HPC, examining and improving the role of women within the community – and take an in-depth look at the High Performance Computing Centre Stuttgart, and the many applications handled there.
Tim Gillett
Managing editor @scwmagazine
34
Production manager Alex Mappledoram Tel: +44 (0)1223 221 035 Fax: +44 (0)1223 213 385
alex.mappledoram@
europascience.com
CORPORATE TEAM Managing director Warren Clark Web
www.scientific-computing.com
SUBSCRIPTIONS:Free registration is available to qualifying individuals. Register online at
www.scientific-computing. com Subscriptions £100 a year for six issues to readers outside registration requirements. Single issue £20. Orders to ESL, SCW Circulation, 4 Signet Court, Swann Road, Cambridge, CB5 8LA, UK. Tel: +44 (0)1223 221 030. Fax: +44 (0)1223 213 385. ©2016 Europa Science Ltd. Whilst every care has been taken in the compilation of this magazine, errors or omissions are not the responsibility of
the publishers or of the editorial staff. Opinions expressed are not necessarily those of the publishers or editorial staff. All rights reserved. Unless specifically stated, goods or services mentioned are not formally endorsed by Europa Science Ltd, which does not guarantee or endorse or accept any liability for any goods and/or services featured in this publication.
US copies:Scientific Computing World (ISSN 1356-7853/ USPS No 018-753) is published bi-monthly for £100 per year by Europa Science Ltd, and distributed in the USA by DSW, 75 Aberdeen Rd, Emigsville PA 17318-0437. Periodicals postage paid at Emigsville PA. Postmaster: Send address corrections to Scientific Computing World PO Box 437, Emigsville, PA 17318-0437.
Subscribe for free at
www.scientific-computing.com/subscribe
AUGUST/SEPTEMBER 2016 3
Cover: Altair
Page 1 |
Page 2 |
Page 3 |
Page 4 |
Page 5 |
Page 6 |
Page 7 |
Page 8 |
Page 9 |
Page 10 |
Page 11 |
Page 12 |
Page 13 |
Page 14 |
Page 15 |
Page 16 |
Page 17 |
Page 18 |
Page 19 |
Page 20 |
Page 21 |
Page 22 |
Page 23 |
Page 24 |
Page 25 |
Page 26 |
Page 27 |
Page 28 |
Page 29 |
Page 30 |
Page 31 |
Page 32 |
Page 33 |
Page 34 |
Page 35 |
Page 36