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LEADER Contents


High performance computing Increasing energy efficiency


Robert Roe finds that making the most of energy efficiency is more than just employing new technology


Tech focus: Software tools


Robert Roe takes a look at some of the software tools available to HPC users


Collaboraton drives new AI processors


Achronix and Bittware collaborate on a new FPGA designed for cloud, AI and machine learning applications, writes Robert Roe


Laboratory informatics Data Formats


The computer-aided battle against antibiotic resistance


Computational tools are being used to aid in the fight against antibacterial resistance, writes Claire Sansom


Modelling and simulation Winds of change


Robert Roe finds that advanced simulation tools provide a platform to develop advancements in energy generation technologies


Resources News


A round-up of the latest news stories Suppliers’ directory


23 26 10 7 December 2019/January 2020 l Issue 169


Robert Roe Editor


4 Green light


As we approach the end of 2019 there is an environmentally friendly feel to the final issue of the year. Energy efficiency is the topic of the HPC feature on page 4. As demand for computational resources increases HPC users are finding ways to further reduce their electricity bills. The tech focus for this issue looks at


12


Sophia Ktori discusses the data standards used to help increase the value of data generated in the laboratory


16 20


software tools for HPC users, beginning on page 7. This feature looks at the role of software to manage and optimise HPC systems to ensure they run at maximum capacity. The focus shifts to AI and ML on page 10, as we take a look at a collaboration between Achronix and Bittware to produce a new FPGA platform designed for cloud, edge computing and AI/ML applications. This new FPGA platform is directly aimed at high compute applications, typically run on GPUs today, so there could be increased competition in the AI and ML markets. Laboratory informatics content begins on page 12, with Sophia Ktori’s feature on data formats in the laboratory. As data volumes in the laboratory increase there is also increased value in this data. Making sure it is accessible and readily available to an organisation is a key consideration. On page 16, Claire Sansom revisits her


Editorial and administrative team Editor: Robert Roe robert.roe@europascience.com Managing editor: Tim Gillett editor.scw@europascience.com Specialist reporters: Sophia Ktori, Gemma Church, Design: David Houghton, Zöe Andrews Partnership & Events Executive: Charlie Mitchell charlie.mitchell@europascience.com


Advertising team Advertising manager: Mike Nelson mike.nelson@europascience.com +44 (0) 1223 221039 Production manager: David Houghton david.houghton@europascience.com +44 (0) 1223 221034


Corporate team Managing director: Warren Clark


Scientific Computing World is published by Europa Science Ltd, 4 Signet Court, Cambridge, CB5 8LA l ISSN 1744-8026 Tel: +44 (0) 1223 211170 l Fax: +44 (0) 1223 213385 Web: www.researchinformation.info


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While every care has been taken in the compilation of this magazine, errors or omissions are not the responsibility of the publishers or of the editorial staff. Opinions expressed are not necessarily those of the publishers or editorial staff. All rights reserved. Unless specifically stated, goods or services mentioned are not formally endorsed by Europa Science Ltd, which does not guarantee or endorse or accept any liability for any goods and/or services featured in this publication.


US copies: Scientific Computing World (ISSN 1356-7853/USPS No 018-753) is published bi-monthly for £180 per year by Europa Science Ltd, and distributed in the USA by DSW, 75 Aberdeen Rd, Emigsville PA 17318-0437. Periodicals postage paid at Emigsville PA. Postmaster: Send address corrections to Scientific Computing World PO Box 437, Emigsville, PA 17318-0437.


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www.scientific-computing.com | @scwmagazine December 2019/January 2020 Scientific Computing World 3


piece from last year, which looked at the fight against antibacterial resistance and the computational tools that are making this possible. The environmental theme continues on page 20, with our modelling and simulation feature on wind energy. Robert Roe takes a look at the advanced simulation tools that enable new innovations in this market, which is becoming increasingly competitive.


@scwmagazine


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